Cisco 650-968 : Configuring Cisco UCS and Cisco Catalyst 3000 for Vblock Series 100 Exam
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Exam Number : 650-968
Exam Name : Configuring Cisco UCS and Cisco Catalyst 3000 for Vblock Series 100
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Cisco 3000 techniques
Linux high efficiency Computing (HPC)
HPC at Bowdoin
in the beginning supporting a single faculty member in a single department, the Bowdoin HPC atmosphere now helps dozens of faculty and college students across numerous disciplines, including biology, chemistry, computer science, digital and computational studies, environmental experiences, economics, geology, historical past, sociology, math, and physics, as well as many individual pupil and school research projects.
a wide selection of software packages and programming languages are available in the Linux HPC atmosphere, both business and Open source, including but no longer constrained to ADF, Beast, C, C++, CUDA, Fortran, Gamess, Gaussian, Grass, IDL, Java, Mathematica, Matlab, Mopac, NBO, NWChem, Perl, Python, R (along with RStudio), Ruby, Sage, SPSS, Stata-MP, SuperMongo, Topspin, and a whole lot more.
There are two diverse strategies for the usage of the Linux HPC components; interactively, and by the use of a batch scheduler that manages the HPC Grid.
Interactive Computing is the manner that most americans use a pc. this is pretty much sitting at a single desktop, working courses, and interacting with those classes either through a GUI (Graphical consumer Interface) or command line interface. Checking email, shopping the internet, and composing a doc are examples of interactive computing. you possibly can use interactive computing if you had been operating any software that displayed snap shots, or required manual interaction with the software whereas it is working, such as inputting extra records, typing additional info, or clicking on an icon. Interactive computing is most appropriate used if you happen to are capable of accomplish your desires throughout the time that you simply could be sitting at the laptop, and can stop the program should you go away (ie, you are not leaving the desktop running your job in case you stroll faraway from it).
Bowdoin Computing Grid
The Bowdoin Computing Grid is a bunch of Linux servers which appear as one big, multiprocessor, compute server that may run many computationally intensive jobs at the same time as. The Grid supports a wide range of jobs from standard shell scripts to heavy computational jobs and parallel processes. Jobs taking several days on a regular desktop machine may finish within hours the usage of the Grid atmosphere, as a result releasing up the computing device desktop for different tasks while the Grid components technique the job on committed computational nodes. individuals engage with the Bowdoin Computing Grid by way of the Son of Grid Engine (SGE), which is a software environment that coordinates the supplies of diverse computers. SGE accepts jobs, places them in a waiting queue except they may also be run, sends them to a computational node, manages them all over the run, and notifies the adult when they are comprehensive.
usually if a job takes more than just a few hours to run on a computing device desktop, or the laptop machine needs to be purchasable for different tasks, remember to believe operating the job on the Grid.
Computational nodes within the Grid latitude from 16 CPU core, 128 Gb RAM techniques, to fifty six CPU core, 256 Gb RAM systems. The Grid additionally presents GPU computational nodes applying NVidia GPU playing cards.
HPC community @Bowdoin
"My collaborator, Tim Divoll from Indiana State university, and that i use the HPC to habits bioinformatic analyses of high throughput DNA sequencing information. The DNA sequences are a metabarcoding analyze to have in mind the weight loss program of a Neotropical bat species, the frog-ingesting bat Trachops cirrhosus. T. cirrhosus has been well studied in captivity for its behavior of searching frogs with the aid of eavesdropping on their calls, but their weight loss program within the wild is basically unknown. They collected fecal samples from greater than a hundred T. cirrhosus people over varied years and across dry and moist seasons in Panama. They then sequenced two gene areas, 16S and CO1 (the use of 454 sequencing and illumina sequencing respectively), from prey continues to be within the fecal samples. they are using the HPC to style and assign taxonomy to the millions of sequences that effect from these subsequent-era sequencing tactics. Their purpose is to be able to comprehensively describe the diet of this bat for the primary time, as well as determine how weight loss plan varies between adults and juveniles, throughout trap websites, and across seasons. understanding a species' weight loss program is a primary step in superior knowing its ecology, and advantage procedures to conservation." -- Patricia Jones, Biology
"a number of of my fresh projects tackle how public counsel like welfare have an effect on the long term consequences of children. for example, one assignment specializes in the role of public suggestions in delaying the onset of definite illnesses or situations like diabetes, bronchial asthma, and excessive blood pressure. This requires longitudinal data the place they will observe individuals from childhood to maturity. The venture makes use of the Panel look at of earnings Dynamics (PSID), an annual pattern that follows households to nowadays starting in 1968. a couple of thousand families generate lots of information when followed for 40 years with huge tips on demographics, salary, labor, health, etc. The examine estimates transition models of age at antagonistic health onset the usage of computationally intensive latent variable strategies that permit joint modeling of family unit income and public tips. The HPC atmosphere makes it possible for me to estimate fashions that burn up to days of CPU time, and run multiple at a time . this might effectively no longer be feasible on a desktop desktop." --John Fitzgerald, Economics
"i am the use of a deep neural network to study an issue in theoretical arithmetic: what's the minimal variety of scalar multiplications indispensable to multiply two matrices. here's a protracted-standing issue that has never been analyzed using desktop studying. according to some preliminary experiments the usage of Bowdoin's GPUs, it appears the existing universal certain on the variety of multiplications can be superior, perhaps greatly." --Thomas Pietraho, mathematics
"i'm a biologist discovering Gulf of Maine marine organisms’ response to changing waters and the underlying genetic mechanisms of adaptation. as a way to do my work, i use the Bowdoin HPC Grid to align and analyze colossal datasets of DNA and RNA sequences. additionally, I harness the computing vigor of the HPC Grid to hyperlink underlying genetic variation with traits that matter to the organisms in the wild, e.g. how smartly a mussel can proceed to build its shell in acidic water.
throughout the fall, my Bowdoin Marine Science Semester students be trained to use the bioinformatic pipelines on the HPC Grid to examine population genomic patterns in a native Gulf of Maine intertidal snail species. These snails display physical adjustments between populations in sheltered shorelines versus wave-uncovered seashores; the BMSS college students utilized next generation sequencing innovations and the HPC to parent the genetic architecture underlying these genuine
This Spring 2017 semester, i'm instructing The Omics Revolution: Computational Genomics and massive information within the field of Biology, where college students be taught to use the HPC Grid to analyze numerous giant-scale datasets commonplace in the ‘Omics’ fields. The Omics Revolution college students will choose a question and latest omic-scale dataset of interest, analyze that data to look at various their speculation, and write a scientific paper summarizing their findings." --Sarah Kingston, Biology
"I have incorporated Amsterdam Density useful (ADF) calculations into my analysis efforts with college students seeing that 2001. ADF calculations allow them to improved take note the bonding and photochemical homes of molecules containing metals similar to platinum, gold, iridium, ruthenium, and osmium. starting about 2005, I brought a computational chemistry venture as part of Chemistry 3400, an advanced Inorganic Chemistry path. The task requires students to operate ADF calculations on a molecule of their deciding on, and to jot down a file describing and decoding the outcomes of the calculations. This undertaking complements the different ingredients of the route and, amongst different issues, gives college students drawn to graduate work in chemistry with advantageous computational chemistry journey. considering the fact that 2008, the Bowdoin HPC Grid has allowed us to run a great deal bigger jobs, and multiple jobs on the same time, which is a very good growth over running on computer computer systems, and also frees up the computer laptop for other initiatives." --Jeff Nagle, Chemistry
"The HPC Grid has been a very good useful resource for educating and doing research with computational textual content analysis. i was in a position to be up and operating rapidly; the manner isn't intimidating. students in my First 12 months Seminar “the way to read 1,000,000 Books” use courses written in R to isolate language utilization patterns in over 1.2 billion facts facets accrued from Google Books. My distinctive research initiatives use smaller facts units: 1 million tweets, essentially 46,000 journal articles, and practically 1,000 books. Having the HPC allows for me to run my analyses devoid of tying up the computing device that i exploit for instructing and every day activities and my pupil research assistants can do the identical, which helps with collaboration. every so often this ability reconfiguring a matrix with billions of elements, other times it capability creating hundreds of smaller documents for assessment. finishing these jobs, and completing them in a reasonable time body, effortlessly wouldn’t be viable with out the HPC." --Crystal hall, Digital and Computational studies
"My college students and i use the Bowdoin Computing Grid to operate numerical relativity simulations of black holes. Einstein’s concept of gravity, regular relativity, is encoded in Einstein’s equations, a complicated set of partial differential equations. The equations may also be solved exactly handiest for special instances. In time-honored, they should depend on some approximation method in an effort to study the habits and interactions of black holes, as smartly because the gravitational radiation that they emit. a specific powerful technique are numerical simulations. In contemporary years they now have used such ’numerical relativity’ simulations to analyze, for instance, binaries of two orbiting black holes, in addition to so-known as ‘essential phenomena’ in the formation of black holes. These simulations require large computational substances and might be carried out handiest in high-performance computing environments. it's extraordinarily valuable to have such substances right here at Bowdoin." --Thomas Baumgarte, Physics
"i am applying the HPC for my research on cricket's neuronal plasticity in keeping with harm. In Dr. Horch's moist lab, they extracted RNA from the terminal ganglion of adult male crickets and are actually building a transcriptome from the sequences. to this point, we've used the HPC Grid to run programs corresponding to bowtie, Fastqc, trim galore! to construct their transcriptome. To determine goal candidates thinking
in neuronal plasticity corresponding to counsel molecules slit and semaphorin, they are able to use the Trinity program suite on the HPC grid and conduct differential analysis. The HPC's excessive computing ability make it handy for me to publish jobs that don't use native supplies on my desktop, nor take years to conclude given the high extent info i am working with. it might be impossible for me to comprehensive my challenge in an intensive or effective method devoid of the HPC Grid." --Meera Prasad, Biology and spiritual stories double predominant
"i'm an economics and arithmetic essential and the HPC has been an outstanding useful resource for my analysis with Prof. Nelson within the economics branch and for my impartial look at with Prof. Pietraho in the mathematics department.
For my economics analysis i exploit the HPC to follow a computing device discovering package to estimate the probability and to describe the factors that affect fishing spots in the Gulf of Maine. The dataset contains 21 bio-psychical and socio-economic variables for around 2.6 million coordinates in the Gulf of Maine. The processing power of the HPC allows for for convenient partitioning of this dataset to learn how these variables engage together, which can then be used to categorise the corresponding prevalence of fishing spots.
even so, for my unbiased examine in arithmetic i am using a deep neural community to categorise images. The goal is to use a pre-expert neural community that has been knowledgeable on a large dataset and distinct categories and then to retrain it on my smaller dataset. Such re-working towards enables us to explore how discover how accuracy of classification is affected.
each my projects could not were implemented on my laptop. The HPC has been a very good facilitator for exploring the analysis questions I have and for demystifying the area of computing." --Parikshit Sharma, Economics and arithmetic most important
"i am a Neuroscience principal and mathematics minor the usage of the HPC for the bioinformatics features of my analysis on the compensatory increase responses to damage in crickets. In lab, I accrued the prothoracic ganglion from 21 male grownup crickets for RNA extraction and sequencing. during the summer of 2016, the usage of the Trinity program suite on the HPC Grid, I assembled a de novo transcriptome of RNAseq read records and commenced differential expression analysis the use of EdgeR. I have also used bowtie, FastQC, the BLAST suite, and Tophat on the HPC for additional analysis of my dataset. After an an initial characterization of the assistance cue peptidome in my transcriptome, i will purpose to identify novel candidate genes for involvement in the compensatory plasticity according to damage using differential expression evaluation. The excessive computing vigour of the Grid and skill to put up jobs that don’t require native components on my laptop had been massively advisable to my task." --Harris Fisher, Neuroscience predominant
background of HPC at Bowdoin faculty
Spring 2003 - advent of specialised Physics cluster (16 CPU cores complete) supporting one computational application for Thomas Baumgarte
Spring 2008 - Hiring of Dj Merrill to assist HPC / research Computing
Fall 2008 - creation of commonplace purpose HPC Grid to guide campus-broad research. Dan O'Leary, Chemistry, become the primary college to use the new aid
Fall 2009 - HPC utilization expands to the school room educating ambiance, assisting both analysis and educational use. Chemistry, laptop Science, Math, Physics, Geology, Economics, and Biology are actively using the HPC ambiance
Spring 2010 - Code ported from the ancient Physics cluster to the new HPC Grid
summer time 2010 - really good Physics cluster retired
summer 2010 - Dhiraj Murthy, Sociology, begins the use of the HPC environment for analyzing Twitter content material
summer season 2011 - GPU compute capabilities introduced to HPC Grid
Fall 2012 - Digital and Computational reviews main created
summer season 2013 - Gluster high velocity facts storage solution delivered to HPC ambiance
summer time 2014 - Campus core server ambiance upgraded. "better of" these systems re-purposed as HPC compute nodes, breaking the five hundred CPU core barrier
summer time 2014 - Sarah Kingston, Biology, starts doing bioinformatics analysis the usage of the HPC environment
summer time 2015 - Upgraded HPC core networking using Cisco's 10 Gb ultra-low latency Nexus 3548 switches, offering speeds similar to Infiniband networking
summer time 2016 - Sarah Kingston teaches seminar on the use of the Bowdoin Computing Grid to run bioinformatics analysis
Fall 2016 - Institutional analysis, Analytics & Consulting Division starts the usage of the HPC environment for statistics set analysis, representing the first enterprise (non-academic) usage
winter 2017 - apart from the regular analysis efforts, 5 classes, an Honors Thesis, and multiple unbiased experiences are the use of the HPC ambiance this term.
Fall 2018 - existing reputation: 1192 CPU cores, 9 GPU compute nodes, 15+ commercial functions, lots of of Open source purposes
during this section